PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0043G10050.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 164aa    MW: 17939.8 Da    PI: 7.4413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0043G10050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.24.1e-0876118345
             AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAaka 45 
                     + GVr+++ +gr++AeIrd + ng +rkr       ta  Aa a
  OB0043G10050.1  76 FIGVRRRP-WGRFAAEIRDSTRNGaRRKRRKKAELATATAAANA 118
                     57******.**********5558898888777778887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.09975118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-576118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAQLPQHSSH SIYYIGYTAD AAASCSSSSS SSSEMLQFDT GCCLEETPAS PAAAARRTAR  60
DNQGRGQPKA EPAAAFIGVR RRPWGRFAAE IRDSTRNGAR RKRRKKAELA TATAAANATT  120
QTRRSKSTEL PATEDESDDH KRFVVELEDL GAEYLEELLW LSET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105RRKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0043G10050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0626121e-37AK062612.1 Oryza sativa Japonica Group cDNA clone:001-105-A10, full insert sequence.
GenBankAP0053251e-37AP005325.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0710F09.
GenBankAP0149631e-37AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-37CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698890.13e-77PREDICTED: ethylene-responsive transcription factor 14-like
TrEMBLJ3KU711e-116J3KU71_ORYBR; Uncharacterized protein
STRINGOB0043G10050.11e-116(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.15e-08ERF family protein