PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0044G10270.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 485aa    MW: 52853.8 Da    PI: 5.4037
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0044G10270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.41.7e-771664851311
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+elLl+cA+avssg+ ++a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+ +    +  +  ++++ ++ e l a++lf  ++ +  +++
  OB0044G10270.1 166 LRELLLSCAQAVSSGSRRRAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAGAGAVSLDHRQLAAAERASTMELLEAYQLFMAACCFKWVAF 260
                     689****************************************************888888888888888889********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                       aN++Il+a+eg +++Hi+D++++ +GlQWp Llq La+R++gpp++R+T vg+p++g   ++ le+tg+rL + A+++g+pf+f+++++ r+e
  OB0044G10270.1 261 AFANKTILRAAEGRSKLHIVDYGAQyHGLQWPRLLQWLAEREGGPPEVRMTLVGQPQPGfrPNRLLESTGRRLGNCARAFGLPFKFRAIATARWE 355
                     ***********************9847*********************************999*************************9999*** PP

            GRAS 188 dleleeL...rvkp..gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                     +++ e++   +  p   Ea++Vn vl+l +l+des+  ++  +rd vL  +++++P v+v +  +  h+++ F +rf eal ++s+lfd+l+a+ 
  OB0044G10270.1 356 TVTAEDIvgaD--PdeAEAVVVNDVLSLGTLMDESGVFDDpsPRDMVLGNIRGMRPVVFVQAVVNGAHGAPFFPTRFREALFFFSSLFDMLDATT 448
                     ******95434..3559******************98877779************************************************9999 PP

            GRAS 276 pres.eerikvErellgreivnvvacegaerrerhet 311
                     p+e  + r+++Er +l+r++v v+a egaer+er et
  OB0044G10270.1 449 PKEGrHLRVVLERDVLRRAAVGVIAGEGAERVERPET 485
                     9988689***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.596140485IPR005202Transcription factor GRAS
PfamPF035145.8E-75166485IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDDDMFFSLY PDHPALLEAQ QPFAQILSSS SALSSGISNH VSGGKSFTGV LDSAPMAEKA  60
RNFSGEDSLE GSAALMMMQG SDNGMGRKGS RHGEDEQEVE LGRASKLMAT PDEDDDDGVG  120
EMLERMMLNG DEACHTEMKA PSVPEKKKAG GKAARRRQAK AEVVDLRELL LSCAQAVSSG  180
SRRRAGELLE QIKRHSSPTG DATERLAHYF ADGLEARLAG AGAVSLDHRQ LAAAERASTM  240
ELLEAYQLFM AACCFKWVAF AFANKTILRA AEGRSKLHIV DYGAQYHGLQ WPRLLQWLAE  300
REGGPPEVRM TLVGQPQPGF RPNRLLESTG RRLGNCARAF GLPFKFRAIA TARWETVTAE  360
DIVGADPDEA EAVVVNDVLS LGTLMDESGV FDDPSPRDMV LGNIRGMRPV VFVQAVVNGA  420
HGAPFFPTRF REALFFFSSL FDMLDATTPK EGRHLRVVLE RDVLRRAAVG VIAGEGAERV  480
ERPET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2817347926311Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0044G10270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780320.0FQ378032.1 Oryza brachyantha chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLJ3KUA30.0J3KUA3_ORYBR; Uncharacterized protein
STRINGOB0044G10270.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-71SCARECROW-like 14