PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0054G10020.1
Common NameLOC102714882
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 857aa    MW: 97457.2 Da    PI: 6.4328
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0054G10020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.81.8e-1394175188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     k+Y++YA + GFs  + ks++  ++g + +  + Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +l+HnH+
  OB0054G10020.1  94 KYYKQYAADSGFSAIILKSSYL-KSGVCRRLVLGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLDHNHP 175
                     69*************9999998.7888***************99998.....999****************99999***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-1194175IPR004330FAR1 DNA binding domain
PfamPF105511.1E-23281374IPR018289MULE transposase domain
PROSITE profilePS509669.619568604IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-4579606IPR006564Zinc finger, PMZ-type
PfamPF044345.2E-6580600IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MVEGLPAELP IVDVAARLGG KSSELPENGA SLKNAEGSQG MGGDCTAELP LHEGKEVILV  60
DDNDSEQEDD GSGKVDENVP RVGLRFKTYD DALKYYKQYA ADSGFSAIIL KSSYLKSGVC  120
RRLVLGCSRA GRGRANACYL SRESTKINCP ARISLKLRQD RWLHIDDAKL DHNHPPNQSS  180
VSPMNCYKKL TDAKNEETAS RSKGRRNVPI GDKEQGSFTE IGRLKFGEGD DEYIYKFFGS  240
MQNKNPDFFY LVDLDKQGRL RNLFWSDAKS QVADDYFGRD VVYFDTSYLT EKYDLPLVFF  300
TGVNNHGQTV LFGTGLLSDL GVDSYVWLFR AFFACMKGCY PAAIITEHYN AILDAVRDVL  360
PQVKHRLCLY RIMKDVTENL KAHAEFKTIK KALKKVTYGS LKAPEFEADW KKIIEEHGLG  420
ENECLSSLYE HRHLWAPAYL KDQFWAGISV SQRGESIVSY YDGFVYPKTS LKQFFSKYEI  480
ILENKYKKEL QADEESSHRT PLTVTKFYME EQLAKEYTIS MFKKFQDELK ATMYCDGMPT  540
KVDGQFVTFE VKECSYMEDG KETESRNYEV YFCKQQTVVE CECGFFQFTG ILCRHVLSVL  600
KLQEMFEIPS RFVLDRWKRD YKNLHASARY RNDEMIPAVL PDGIIERHDN LFAQSRQVLK  660
LGFISENRYL VALKLLRQAE KTLLDDGLSR DRQPGLLSFE AEAPENDQGL FSPEFSEGVK  720
NSQSTNAKRR GRPTKKLIES NSDTVLRPNK EQDFLRSSFV TDESNMIQGA PSASHLESPH  780
MGVQGSIDLM EGISPNLSFN PPFGMDVNHQ QQVPTQPRML PNNFLQAQAD SQGYGNQWAY  840
PTLQDNSILR TAARRGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0054G10020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1193190.0AK119319.1 Oryza sativa Japonica Group cDNA clone:001-130-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664901.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_015698941.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLJ3KUH80.0J3KUH8_ORYBR; Uncharacterized protein
STRINGOB0054G10020.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-123FAR1-related sequence 6