PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0086G10030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 335aa    MW: 35895.9 Da    PI: 6.0399
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0086G10030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY857e-27130191159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK++ g+++pr+Y+rCt++   gC++ k+v+r++ dp +++++Y+g+H++ 
  OB0086G10030.1 130 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCHASKQVQRADGDPLLFDVVYHGNHTCA 191
                     59***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-27117191IPR003657WRKY domain
SuperFamilySSF1182906.02E-25123191IPR003657WRKY domain
PROSITE profilePS5081121.551125188IPR003657WRKY domain
SMARTSM007741.5E-39130192IPR003657WRKY domain
PfamPF031062.9E-25131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEGSSSDGRY GAARCALEAE LVQMQGMARQ LEAQMGLQGG GGAAMAGAEE RRRALVSSML  60
SSIDRSISIA RTRVPCCVEG RLAQPAGAAP ESPPSADGSA GSDHGVDSRK MLPKWSTQVR  120
VCSVQDVGPL DDGFSWRKYG QKDILGAKYP RAYFRCTHRH TQGCHASKQV QRADGDPLLF  180
DVVYHGNHTC AQGARSVVDG NPRPRHTVSP EQQPQPPPPQ PQQEQNAFSV GINPAKEEGP  240
VQQSLQEPTS SRPFTFTADD SGGTGTLLHG CSTSDCQVSS SVYELGGGST MAGVRNVPDV  300
ELPSKTINSS MGEDMEFMLA LEMDSDFFHK YPGYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-21127190568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0086G10030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769261e-114AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664979.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLJ3KUW50.0J3KUW5_ORYBR; Uncharacterized protein
STRINGOB0086G10030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-40WRKY family protein