PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0134G10010.1
Common NameLOC102711039
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 307aa    MW: 32807.5 Da    PI: 10.0386
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0134G10010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.31.3e-22101333128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      G+rF+P+ ee+v  yL   +++++l+ + + i+ +d+y +eP+dL +     + +++ + +f+ + ++ +    r +ra+  g+W + g+++ +
  OB0134G10010.1  10 IGLRFNPSPEEVVAIYLPSLITNQPLRDNAAcIRPADVYGAEPKDLAAefapVAGSSNGDRFFYNRCRRIK---GRFSRAAGGGTWVSHGRKRII 101
                     7************************8776666**************8435543333444667777777754...69******************* PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++g ++g  k + f     ++g++tdW+m ey++
  OB0134G10010.1 102 KNTQGVKIGESKNFRFK----KDGKNTDWLMAEYHV 133
                     ****************7....78899********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.2228151IPR003441NAC domain
SuperFamilySSF1019414.84E-258151IPR003441NAC domain
PfamPF023652.5E-1211133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MADLDALLDI GLRFNPSPEE VVAIYLPSLI TNQPLRDNAA CIRPADVYGA EPKDLAAEFA  60
PVAGSSNGDR FFYNRCRRIK GRFSRAAGGG TWVSHGRKRI IKNTQGVKIG ESKNFRFKKD  120
GKNTDWLMAE YHVCRQDAGD VEPVVCRMYV SPRAPQDSAA RQESAAHPPP PPPPAPLPNQ  180
EPAVVTQQAV QKSPPPCAEK MGGAVSARPA LHQSCATPPS PSRRTMALAP PLAPGKSAIA  240
PPRQVAVITE QQEPLKRPAA APVAEPPCAK KTRGSVSASP VAPSSLPPQP PSRRAVSPPI  300
ETYPKDP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0134G10010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006665064.10.0PREDICTED: vegetative cell wall protein gp1-like
TrEMBLJ3KVA40.0J3KVA4_ORYBR; Uncharacterized protein
STRINGOB0134G10010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.13e-14NAC family protein