PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0164G10010.1
Common NameLOC102709240
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 293aa    MW: 32753.4 Da    PI: 4.7027
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0164G10010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.83e-13116207298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                     +fqr+ws eDe+ +L +l   ++++g+ p+   da+   + + ++     ++ l  Ki  LK+++k   kk   g+    sk +d+  f+lsk+i
  OB0164G10010.1 116 AFQRIWSTEDEVRILEALAAHREEHGALPQG--DALAASLAGILDKPgCDRRGLQGKISTLKRRYKAIAKK--GGEL--PSKGDDRLLFDLSKRI 204
                     79************************77665..57788888888775267889****************99..4444..468999********** PP

          DUF573  96 Wgs 98 
                     Wgs
  OB0164G10010.1 205 WGS 207
                     *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.6E-19117206IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MARSARRRRP PPPPPPPRVS SSEETASDES EEEEAVATPV VPNKGEESDS SDEGESEDEE  60
EAEEDMVKSS ATNSRAPPPK NLEGEEEDEP SESEKAPQLP PKKQAFQRIW STEDEAFQRI  120
WSTEDEVRIL EALAAHREEH GALPQGDALA ASLAGILDKP GCDRRGLQGK ISTLKRRYKA  180
IAKKGGELPS KGDDRLLFDL SKRIWGSQAA NGATREFDEM CELYPHLAEE VKAWEEKYPG  240
LFKRDFGRID DNKARALDMK IKKQRLAEMN VEMRSSNLTR QVGKVFAELA KVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0164G10010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006665059.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLJ3KVE70.0J3KVE7_ORYBR; Uncharacterized protein
STRINGOB0164G10010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-08DNA-binding storekeeper protein-related transcriptional regulator