PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0171G10030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 120aa    MW: 12505 Da    PI: 11.3241
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0171G10030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof37.26.1e-1220453560
          zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkk 60
                    +CrryW +GG+lrn+P+G+++ k+ +
  OB0171G10030.1 20 SCRRYWMHGGSLRNIPIGSSTCKRPR 45
                    8******************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-42040IPR003851Zinc finger, Dof-type
PfamPF027013.9E-72043IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MEIYTTACCR DGVVKKRSTS CRRYWMHGGS LRNIPIGSST CKRPRAARPT HAAVAATASA  60
GAATTPRFPS SSSSSSQLQQ ATNATAAANQ LVQEAVAMSD DGSHRAVPRT RSHGAGGACR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0171G10030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3KVF98e-81J3KVF9_ORYBR; Uncharacterized protein
STRINGOB0171G10030.11e-81(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21080.11e-06Dof-type zinc finger domain-containing protein