PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G10560.1
Common NameLOC102709209
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 209aa    MW: 22683.9 Da    PI: 9.7902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G10560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-0937103455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC.................TTS-.STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkas..............kapskK.lsKaeiLekAveYIksLq 55 
                     + +E++RR +++    +L +l+P+++              + ++k  ++  e Le+A  YIk+L+
  OB01G10560.1  37 ERKDVEKNRRLHMKGLCLKLSSLIPPPPppqphhhhhstsppSSTCKEtVTQLEHLEQAAAYIKQLK 103
                   56899*********************666*************6666667****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.65233102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-935115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-1135115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-637102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKSRKQQQST RSAAGGGGDT SSSGGGGGNW YSSSKMERKD VEKNRRLHMK GLCLKLSSLI  60
PPPPPPQPHH HHHSTSPPSS TCKETVTQLE HLEQAAAYIK QLKGRIDELK KRKQQAAPLS  120
SMPVVEVRCQ EGTLDVVVVS EAGDRAAAPV RLHEVIAVLE EEGAEVVNAS FSVVGDKIFY  180
TLHSQALCSR VGLDASRVSH RLRTLLLLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G10560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094322e-95AK109432.2 Oryza sativa Japonica Group cDNA clone:006-308-A12, full insert sequence.
GenBankAP0028452e-95AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06.
GenBankAP0149572e-95AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-95CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8347292e-95CT834729.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693762.11e-152PREDICTED: uncharacterized protein LOC102709209
TrEMBLJ3KVQ01e-151J3KVQ0_ORYBR; Uncharacterized protein
STRINGOB01G10560.11e-152(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.14e-18bHLH family protein