PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G13760.1
Common NameLOC102722339
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 900aa    MW: 98730.6 Da    PI: 8.4126
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G13760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.3e-06258275118
      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                   CG+H+C   CH GpCppC
  OB01G13760.1 258 CGIHRCPVDCHDGPCPPC 275
                   ****************** PP
2zf-NF-X116.42e-05311330120
      zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                   CGkH+C++ CH G+C++Cp+
  OB01G13760.1 311 CGKHSCERGCHAGKCGECPL 330
                   ******************95 PP
3zf-NF-X116.51.8e-05365384119
      zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                   CG+HkC + CH+G C + C+
  OB01G13760.1 365 CGRHKCPERCHRGSCVEtCR 384
                   ***************99997 PP
4zf-NF-X116.51.8e-05418437120
      zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                   CG+H C + C+eG+C pCp+
  OB01G13760.1 418 CGRHACRRRCCEGDCAPCPE 437
                   ******************96 PP
5zf-NF-X119.91.6e-06445464120
      zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                   CG+HkC ++CH+G C pCp+
  OB01G13760.1 445 CGNHKCLSPCHRGSCSPCPL 464
                   ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.008205223IPR000967Zinc finger, NF-X1-type
PfamPF014220.0094206222IPR000967Zinc finger, NF-X1-type
CDDcd060088.22E-9248296No hitNo description
SMARTSM004380.0011258277IPR000967Zinc finger, NF-X1-type
PfamPF014225.8E-5258275IPR000967Zinc finger, NF-X1-type
CDDcd060085.39E-7301341No hitNo description
SMARTSM004380.0036311330IPR000967Zinc finger, NF-X1-type
PfamPF014220.045311329IPR000967Zinc finger, NF-X1-type
CDDcd060086.00E-9355404No hitNo description
SMARTSM004380.035365385IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033365384IPR000967Zinc finger, NF-X1-type
CDDcd060084.30E-9408456No hitNo description
SMARTSM004380.087418437IPR000967Zinc finger, NF-X1-type
PfamPF014220.0041418436IPR000967Zinc finger, NF-X1-type
CDDcd060082.45E-10435483No hitNo description
SMARTSM004380.0072445464IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-4445463IPR000967Zinc finger, NF-X1-type
SMARTSM0043885502523IPR000967Zinc finger, NF-X1-type
PfamPF0142229512522IPR000967Zinc finger, NF-X1-type
SMARTSM00438180531576IPR000967Zinc finger, NF-X1-type
PfamPF0142288531540IPR000967Zinc finger, NF-X1-type
SMARTSM0043848613652IPR000967Zinc finger, NF-X1-type
PfamPF014224.9613623IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035662680IPR000967Zinc finger, NF-X1-type
PfamPF0142213662679IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15725746IPR000967Zinc finger, NF-X1-type
PfamPF01422150727739IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MPSSYAAAAS GSASSSRKPI PLAAAAARRP APSAAAAPSP SNPSAVSDSD PSSCSSSGEE  60
TDLTSSDPAA ASVISAYLSV AGNGANLSKV GIFLSSAARR RSPPRLICFD PIRPSDPVWS  120
CSASCFALLH LHCIQSWAHQ LASAAPSPTW GCPKCRFPYP KSQTPTSYLC FCSKTVDPAP  180
DPWILPHSCG DVCGRRLNAN LDSGCEHTCL LLCHPGPCPP CPAIVPNAMC FCGSHRETRR  240
CSHQRYSCTG KCNKRLGCGI HRCPVDCHDG PCPPCAVRGK HKCECGATME ERLCSERVFQ  300
CKRDCGGMLE CGKHSCERGC HAGKCGECPL QGRRTCPCGK KDYPSLDCDA EAATCGSTCE  360
KVLGCGRHKC PERCHRGSCV ETCRLVITKS CRCGGLKKEV PCYQELTCER KCQRLRNCGR  420
HACRRRCCEG DCAPCPEVCD KRLRCGNHKC LSPCHRGSCS PCPLMKTISC NCGQTFFEVP  480
CGTEKNQKPP KCSKKCNVAR LCSHKLECQP HKCHYGACPP CKLICGEELS CGHRCKLRCH  540
GPIAPPNPEF TLKPVKRKKE KHIESTPGTQ CPPCQEVVLV PCFGQHLGQE RAILCSKKRQ  600
FPCQNLCGNP LNCGNHYCTK GCHVLENPLS QPEGDQSAIL TAFAEACEEC NLPCRRVREP  660
PCSHPCPLPC HLDDCPPCKV LVKRPCHCDA MVHAFECMYY NNLSAKEQQK VRSCGGPCHR  720
KLPNCPHLCS EICHPGQCPS VDRCMKKVNV RCACNTLKKE WVCQDILKEY HRSGRDPKQI  780
PKNQYGIGLL ACGEDCMKKV KAADAELHLR KNQEIKIPAV EVENVPKRRK RRNRGQESVE  840
SSKFQETKAF ALKCLLVVLL SIIAVAGLYL LWKGVYRLSD WMNELEEQRA KQRHLKPARL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1825831PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G13760.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643776.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLJ3KWM00.0J3KWM0_ORYBR; Uncharacterized protein
STRINGOB01G13760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors