PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G13800.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 260aa    MW: 28506.6 Da    PI: 9.0019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G13800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.8e-1170114554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h+e+ErrRR+riN  + +Lr+++P       k ++Ka+ L ++v+ +k+L
  OB01G13800.1  70 HSEAERRRRERINAHLTTLRRMIPDT-----KQMDKATLLARVVDQVKDL 114
                   9************************9.....67***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1356124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.76165114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1369125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-870114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.964161239IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.5E-7163228No hitNo description
SuperFamilySSF550213.51E-6163224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAECQPLLQL QEGKELQELQ PYDGCDPSVY RGSILLPRQA SSAAPAGLPE MSSSSGSGRS  60
ATEARALKIH SEAERRRRER INAHLTTLRR MIPDTKQMDK ATLLARVVDQ VKDLKRKASD  120
ITQQMALPPE TNEVSIECFT GDAAAAVAVA ATGNHKTLYI KASISCDDRP DLIAGITQAF  180
HGLRLRTVRA EMTTLGGRVQ HVFILHREEE GLAGVSLKSL KEAVRQALAK LASPEIVYGS  240
NHFQSKRQRI LESHCSIMSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G13800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315680.0CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693105.11e-165PREDICTED: putative transcription factor bHLH107
RefseqXP_015693108.11e-165PREDICTED: putative transcription factor bHLH107
RefseqXP_015693112.11e-165PREDICTED: putative transcription factor bHLH107
TrEMBLJ3KWM40.0J3KWM4_ORYBR; Uncharacterized protein
STRINGOB01G13800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-28basic helix-loop-helix 32