PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15230.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 287aa    MW: 30808.5 Da    PI: 11.0626
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.49e-11252273122
                   ---SS-EEEEEEE--TT-SS-E CS
          WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                   ldDgy+WrKYGqK+vk++++pr
  OB01G15230.1 252 LDDGYKWRKYGQKVVKNTQHPR 273
                   59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-12237274IPR003657WRKY domain
SuperFamilySSF1182901.18E-9244274IPR003657WRKY domain
PROSITE profilePS5081112.84247273IPR003657WRKY domain
SMARTSM007741.3E-4252284IPR003657WRKY domain
PfamPF031061.5E-7253275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MFPSPGRAVM ALGQHGAMAA GRGGPPAAPP PPRRGPSHRS LHLPALADGA SHGRCCSCCC  60
SPPSPPPPSP WHPRVQPARP RPPNHRRHLL LPARGALSHH PPPRPPRRSS SSHPPFPSSE  120
IVAGDASMVT SPSLPPGLPD TPVYVRLRAI HMTPPLLICH PCCACARSCE EGDRGRQRGK  180
GAAAVMGTGR IIDDDDPGGS YAAAAGPQQH PPHHQLAVGA VRMKKAAAGG KARRKVREPR  240
FCFKTMSDVD VLDDGYKWRK YGQKVVKNTQ HPRYTILLTH LHHGIHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024843e-67AP002484.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0489A01.
GenBankAP0030473e-67AP003047.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0666G04.
GenBankAP0149573e-67AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126093e-67CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3KX170.0J3KX17_ORYBR; Uncharacterized protein
STRINGOB01G15230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-18WRKY DNA-binding protein 13