PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15310.1
Common NameLOC102716273
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 155aa    MW: 16267.8 Da    PI: 3.7051
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC28.82.6e-091171522055
         NF-YC  20 elPlarikkilkadedvkmisaeaPvllskacelfi 55 
                   +lPl r+k+i+++d d+k++++ea  l++ a elf+
  OB01G15310.1 117 ALPLGRVKRIIRVDRDIKKVTSEAALLITAATELFL 152
                   79********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.6E-8112153IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.9E-11115155IPR009072Histone-fold
PfamPF008083.6E-7118152IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MAAADAVAVA VADEAMERVE GGPEEAVAVA DEAADGERKE ADAAAEEATV VMEEVEGERE  60
EADPVAGEVT EAMEEVEGER EEVDDVADEA AEAMEQVEGE REEGDAVAGS EASLRLALPL  120
GRVKRIIRVD RDIKKVTSEA ALLITAATEL FLGSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024842e-45AP002484.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0489A01.
GenBankAP0149572e-45AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645576.15e-94PREDICTED: protein Ycf2, partial
TrEMBLJ3KX251e-92J3KX25_ORYBR; Uncharacterized protein
STRINGOB01G15310.12e-93(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628