PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15520.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 189aa    MW: 20443.4 Da    PI: 8.1906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.19.7e-2592143151
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEE CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveit 51 
                   ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d  ++++t
  OB01G15520.1  92 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCADDMAILITT 143
                   58***************************99************999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.92E-2286143IPR003657WRKY domain
PROSITE profilePS5081121.34587143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-2488143IPR003657WRKY domain
SMARTSM007747.5E-2592149IPR003657WRKY domain
PfamPF031062.0E-2193143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDVAVESPPV MIEEKKVDAA VIGSGAPPIV FESFASTQRD SSFVVKKEEK MEATKAEMGE  60
VREENERLKT MLSRIVSDYQ SLQMHFLDVV KMNDGCQWRK YGQKISKGNP CPRAYYRCTV  120
APNCPVRKQV QRCADDMAIL ITTGGGAAPA AVTDTIAKAI TSDPSFQSVL AAAITSYMGR  180
GGGAAAQNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-1873146167WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892406e-68AK289240.1 Oryza sativa Japonica Group cDNA, clone: J100075H09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645581.11e-56PREDICTED: probable WRKY transcription factor 72
TrEMBLJ3KX461e-138J3KX46_ORYBR; Uncharacterized protein
STRINGOB01G15520.11e-139(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-32WRKY DNA-binding protein 72