PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15640.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 249aa    MW: 27701.8 Da    PI: 7.8397
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-072371247
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
     OB01G15640.1  2 FLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 37
                     77789******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.943142IPR017930Myb domain
CDDcd001670.00113138No hitNo description
TIGRFAMsTIGR015575.7E-12141IPR006447Myb domain, plants
SuperFamilySSF466895.38E-9142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-5236IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MFLMGLQKLG KGDWRGISRN FVVSRTPTQV ASHAQKYFIR QTNSSRRKRR SSLFDMVPEM  60
PMDESPVVAE QLMLCSTQDE TTNSNQLPML HLVKQKEPEF ARHLSDLQLR KHEDSEFTEP  120
SLAALDLEMN HTVPFKAKSV LTMPTFYPAL IPVPLTLWPP NVANVDEAGT THEILKPTPV  180
NGKEINKADE VVGMSKLSIG EGISDTIQPS ALSLQLTGPT NTRQSAFHVN PPMAGPDLIK  240
RNNSPIHAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15640.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716110.0AK071611.1 Oryza sativa Japonica Group cDNA clone:J023105I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645587.10.0PREDICTED: transcription factor MYB1R1-like
TrEMBLJ3KX580.0J3KX58_ORYBR; Uncharacterized protein
STRINGOB01G15640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-48MYB_related family protein