PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15830.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 102aa    MW: 10752.9 Da    PI: 4.253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081440126
                     TSSS-HHHHHHHHHHHHHTTTT.-HHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWkt 26
                     rg+W++eEd  l d+++++G+g +W +
     OB01G15830.1 14 RGPWSPEEDAALRDYIQRHGTGgNWIS 40
                     89********************96644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-10544IPR009057Homeodomain-like
SuperFamilySSF466892.73E-6944IPR009057Homeodomain-like
PROSITE profilePS500906.713938IPR017877Myb-like domain
PfamPF002499.0E-71441IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MGRTPCCDRE AVKRGPWSPE EDAALRDYIQ RHGTGGNWIS LPAKAASNWS ADTGVVVGGG  60
GAGLFPDFCM SSDLTAGAAT AEDDHFLGGY YYPLDPSLSL VE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741352e-50AF474135.1 Oryza sativa typical P-type R2R3 Myb protein gene, complete cds.
GenBankAK1091252e-50AK109125.1 Oryza sativa Japonica Group cDNA clone:002-155-D04, full insert sequence.
GenBankAP0027432e-50AP002743.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0710E05.
GenBankAP0027462e-50AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBankAP0149572e-50AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY4593392e-50AY459339.1 Oryza sativa (japonica cultivar-group) clone CL005170.5 R2R3-MYB gene region.
GenBankCP0126092e-50CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696839.12e-34PREDICTED: pre-mRNA-splicing factor CEF1-like
TrEMBLJ3KX773e-69J3KX77_ORYBR; Uncharacterized protein
STRINGOB01G15830.15e-70(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.16e-22MYB family protein