PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G16580.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 358aa    MW: 38875.2 Da    PI: 11.9619
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G16580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.91.4e-05444539
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                   C+ +e  e++  C  ++  lC+ C    H        H +
  OB01G16580.1  4 LCSGCEAAEARVLCCADDAALCPRCDRDVHAAnrlagkHHR 44
                  7******99******************99955677778554 PP
2zf-B_box30.57.6e-1064105237
      zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                   ++++C+ ++e ++ +fC +++ llC++C ++ H        H
  OB01G16580.1  64 SPPNCDICQESHAYFFCVEDRALLCRSCDVAVHTAnafvsaH 105
                   6799******99*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.381147IPR000315B-box-type zinc finger
SMARTSM003364.4E-7147IPR000315B-box-type zinc finger
CDDcd000216.01E-5344No hitNo description
SMARTSM003361.3E-1463110IPR000315B-box-type zinc finger
PROSITE profilePS501199.64163110IPR000315B-box-type zinc finger
PfamPF006433.2E-86597IPR000315B-box-type zinc finger
CDDcd000211.41E-868110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MKVLCSGCEA AEARVLCCAD DAALCPRCDR DVHAANRLAG KHHRLPLLSS SSSSSAPAAA  60
ASSSPPNCDI CQESHAYFFC VEDRALLCRS CDVAVHTANA FVSAHRRFLL TGVQVGLDPA  120
AADDDNQPDP EPHNNNASSA PPLQPPPQCA RKRSPSPLYS DDDVIDWATG GQAVSITGNL  180
PDWSVVNEQF STPAPAVGQA AEPVVTKTPP KRSSRGPVTP ATAAAGVRQP RRRLAGLAAR  240
RVLRLRRVQR RLRLHREHHH VQGGQRQARE HGRHAERQVV AFVFAPRRRR PGLLRPGAGR  300
PLGRAGAPLA AHGLRAPLAT GPAPRRRRHR RRRRGRRGLR AGHLLAGESL PLLRRRRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325335RRRHRRRRRGR
2326333RRHRRRRR
3329336RRRRRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G16580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696384.11e-159PREDICTED: LOW QUALITY PROTEIN: B-box zinc finger protein 22
TrEMBLJ3KXF20.0J3KXF2_ORYBR; Uncharacterized protein
STRINGOB01G16580.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-40light-regulated zinc finger protein 1