PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G16990.1
Common NameLOC102708392
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 190aa    MW: 21714.4 Da    PI: 10.5243
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G16990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.1e-113682248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++WT+eEd    ++  + G ++W+++a+ m  +Rt+ qc++rw+++l
     OB01G16990.1 36 QAWTPEEDACRERLAGENGFRRWRRVASAMSRRRTPGQCRDRWRDHL 82
                     79******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3943086IPR017930Myb domain
SMARTSM007171.2E-73484IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-1337100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-153794IPR009057Homeodomain-like
CDDcd001671.15E-83782No hitNo description
PfamPF139212.8E-103899No hitNo description
PROSITE profilePS500907.0583134IPR017877Myb-like domain
SuperFamilySSF466892.26E-886136IPR009057Homeodomain-like
SMARTSM007171.587136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-695135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDMETSPPAF SSTTTEGPAA TPTSSGRIVV RIRVSQAWTP EEDACRERLA GENGFRRWRR  60
VASAMSRRRT PGQCRDRWRD HLARDVYHRP FTSEDDAELA RIRLRDGRGR WKDISRAVYC  120
RSSRALKRRW RELRKSDAFL RALYWYPHQP VQPPADSIVL SCSVGCDAVA GGGKTPGISP  180
AWSYNLQESY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128RALKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G16990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020921e-101AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09.
GenBankAP0020931e-101AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10.
GenBankAP0149571e-101AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-101CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645625.11e-137PREDICTED: transcription factor MYB44-like
TrEMBLJ3KXJ31e-135J3KXJ3_ORYBR; Uncharacterized protein
STRINGOB01G16990.11e-136(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-14myb domain protein 73