PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G17480.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 240aa    MW: 26638.4 Da    PI: 9.2798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G17480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-1382128354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++h+e+ErrRR+riN  +++Lr+++P        K++Ka+ L ++v ++++L
  OB01G17480.1  82 KSHSEAERRRRERINAHLATLRTMVPCT-----DKMDKAALLAEVVSHVRKL 128
                   58*************************7.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1372131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.48579128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-1182128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1483130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1285134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-492129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGSAPFGDAA AAGRLYDFQG YHGGGHGPYG VRQPQPGRAS ASSVFFDDGE TDGMAAAAAA  60
DMDMPRKDCG GDRDEKAAMA LKSHSEAERR RRERINAHLA TLRTMVPCTD KMDKAALLAE  120
VVSHVRKLKS AAARVGRCSP VPSGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G17480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685934e-82AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698683.12e-97PREDICTED: transcription factor SPATULA-like
TrEMBLJ3KXP24e-96J3KXP2_ORYBR; Uncharacterized protein
STRINGOB01G17480.16e-97(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-14bHLH family protein