PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G18700.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 489aa    MW: 55296.2 Da    PI: 7.8115
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G18700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.3e-17127216198
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+k +++s+v +  +l lp +f+++h  k   ++ ++lede+g   + ++    ++++  l++GW++F+  +++k+gD+vvF+l++ ++f  +v ++
  OB01G18700.1 127 FVKHMLQSHVVRGFWLGLPADFCNKHLPK--HDTGIVLEDEDGTNHDTTY--LSSKQG--LSAGWRGFAVNHDIKVGDVVVFQLVRLTKF--KVYIL 215
                   899***********************433..3446***************..666666..9**********************9986888..88887 PP

                   - CS
            B3  98 r 98 
                   r
  OB01G18700.1 216 R 216
                   7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-19121217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-22122217IPR015300DNA-binding pseudobarrel domain
CDDcd100177.21E-25125216No hitNo description
PfamPF023621.5E-14127216IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407127218IPR003340B3 DNA binding domain
SMARTSM010193.0E-17127218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEQKIALVNQ RLALLDSSSS SSGSDKDDEF EPGVRSCIEC FHTSSDCCWI SLSHKMLRPK  60
EVYSEQRTIP AAPRTCNTQN TSNDLTKTTK VSVKGQNKYL SAEECCGSAM ERAQEVQAKL  120
PAEHPSFVKH MLQSHVVRGF WLGLPADFCN KHLPKHDTGI VLEDEDGTNH DTTYLSSKQG  180
LSAGWRGFAV NHDIKVGDVV VFQLVRLTKF KVYILREKNF GTTDEALGFL SYDACKKRKI  240
SKVTDNAKPK EDPKTTRVSS KVEITDNAKS KEDPKPIRIS SKVVRDDTQN LVSEAIDGIR  300
FSDSEISFED VASFSNFNII VDSLVIDCKF LDHQRRTYYE LCCSQKSFLH KHLLRQLNLK  360
LVVGVIMETI IIAEGIRACK VNTSSHEDFL IWKKTLESFQ LLGMNVVFLL KRVDDLLGLA  420
AQPRDPSECD KYNEMKRERS RTGEKMKALE SKMSTLKDAL KKIDAEMEEM ESSLRKYDTA  480
LQKIATAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G18700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699237.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLJ3KY140.0J3KY14_ORYBR; Uncharacterized protein
STRINGOB01G18700.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-40B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]