PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G19360.1

Common Name

LOC102714684

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 296aa MW: 31654.6 Da PI: 7.3422

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G19360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.3	6.2e-23	35	81	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ OB01G19360.1 35 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 81 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.972	14	103	IPR003035	RWP-RK domain
Pfam	PF02042	4.7E-21	36	81	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MCAAPMASGA QPQQPAALQQ QQEEEAQAQK PTRVSLSYEE ISKLFSLPIA EAASILGVCT 60 SVLKRICRSH GIVRWPYRKL VSGKSGDDTK SAEREKAKEL LEISRLAKQK ALSASGLSTV 120 SPGTFQGVAK SQQGSSKAGQ VSPPGKQNAL SGSGILAHGT QTKAIPTYMD DFKHGFPSCG 180 LSWETMKWWG TDSHTETTPA KDENGEAPES ANEASKGMTD DDELDWGADE AEAEAITTEP 240 SAQLCTLRRK AVDDGRKLLT GKTCGSLELC RLNKRQKMAL AQVFGASLPE QSSRLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G19360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006643988.1	0.0	PREDICTED: protein NLP2-like
TrEMBL	J3KY80	0.0	J3KY80_ORYBR; Uncharacterized protein
STRING	OB01G19360.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	2e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	102714684