PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G19700.1
Common NameLOC102717656
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 162aa    MW: 17538.6 Da    PI: 8.7274
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G19700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-096485627
                  -SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                  C++f rtGtCk+Gd+C++ H++
  OB01G19700.1 64 CQHFVRTGTCKFGDSCRYFHPK 85
                  ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.7E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576678.98E-15447No hitNo description
PfamPF062201.1E-9537IPR013085Zinc finger, U1-C type
SMARTSM003562.8E-46085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-76285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-66383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8316386IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-76385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTAA ARKRHLEGSQ HQRARALWYD AVRRQELHGG GAPLVQTDGG  60
IGVCQHFVRT GTCKFGDSCR YFHPKPGPAH PGSPPSGPGS RPMVQQSNFL GSQPNFVGYQ  120
AADGSSLSGN ILGGHTSWGN LPPSLRPPPE GGYPPFPFVD WG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G19700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714201e-153AK071420.1 Oryza sativa Japonica Group cDNA clone:J023090K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694169.11e-117PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP113e-87C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLJ3KYB41e-115J3KYB4_ORYBR; Uncharacterized protein
STRINGOB01G19700.11e-116(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-27C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]