PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G20080.1
Common NameLOC102721314
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 436aa    MW: 46535.5 Da    PI: 8.5355
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G20080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-102248127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                  ++++ C +++rtG C yG++C+++H++
  OB01G20080.1 22 PGEADCVYYLRTGACGYGENCRYNHPR 48
                  57899********************96 PP
2zf-CCCH37.44.1e-127399127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                  ++++ C +f+++GtCk+G++Ck+ H++
  OB01G20080.1 73 PGQPVCEYFMKNGTCKFGSNCKYDHPR 99
                  5789*********************96 PP
3zf-CCCH30.37e-10118143227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   +++ C+++ +t +Ck+G++CkF+H++
  OB01G20080.1 118 GEKDCSYYVKTSHCKFGSTCKFHHPE 143
                   7889********************96 PP
4zf-CCCH37.44.3e-12269295127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C+++++tG Ck+G+ Ck++H++
  OB01G20080.1 269 PGQPECQYYLKTGSCKFGSACKYHHPQ 295
                   5789*********************97 PP
5zf-CCCH28.72.2e-09317341327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +C ++ + G+Ck+G++CkF H++
  OB01G20080.1 317 SQPCAYYTQHGFCKFGPTCKFDHPM 341
                   679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-62148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2112149IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-72348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-62550IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-42748IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.85972100IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-77299IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-107499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-675100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-577100IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4116143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892116144IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7118143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5119143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413268296IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6268295IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-10270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5272295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4274294IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69314342IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6316345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5318339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MWRLGLGGGG GEAGAVRLPE RPGEADCVYY LRTGACGYGE NCRYNHPRDR ASAAAALNGG  60
GKSTHSAEYP ERPGQPVCEY FMKNGTCKFG SNCKYDHPRE GSVQPVVLNA SGYPLRPGEK  120
DCSYYVKTSH CKFGSTCKFH HPETGGVTPN MYPPVQPPPI SSSHPYPHLA GWQMGRPPVL  180
QGSFLSGSYP PMMLPSTVVP MQGWNPYISP VNQVASAGGH QAVQAGQFYG LSHQGPSSAV  240
TYSSQYAPLL SSAMPLSSSK QEPAFPERPG QPECQYYLKT GSCKFGSACK YHHPQYLNTP  300
KSNCMLSPLG LPLRPGSQPC AYYTQHGFCK FGPTCKFDHP MGTLNYSPSA SSITDLPIAP  360
YPLNFAVAPV APSSSSSDLR PEYFLTKEFS ANQSSPPGGT TCGPAGAIVK AYAPHMLIRP  420
QTSGAGGLVT THGGYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G20080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739200.0AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644012.10.0PREDICTED: zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLJ3KYF20.0J3KYF2_ORYBR; Uncharacterized protein
STRINGOB01G20080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-109C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]