PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G21760.1
Common NameLOC102716730
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26527.6 Da    PI: 10.2535
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G21760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-15951143
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                  kri  +s r  t+ kRr+g++KKA EL  LC++ v+v++++++
  OB01G21760.1  9 KRIVKDSTRRLTLKKRRKGLIKKAGELASLCGIGVCVVVYGEE 51
                  68889999*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.82150IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-15160IPR002100Transcription factor, MADS-box
CDDcd002661.43E-24285No hitNo description
PRINTSPR004042.3E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-20395IPR002100Transcription factor, MADS-box
PfamPF003198.8E-141050IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MARNRIILKR IVKDSTRRLT LKKRRKGLIK KAGELASLCG IGVCVVVYGE EEVHPEVWPS  60
APETRAILSR FNAAPNVDRF KKVTNQEDYL HKRIAKVQEH MSKTNDENFE RDATVMLYEA  120
AKSKRPIADL NIKELTDLGM VIDERIKNTK EYIEHRGGAP LMEPLPMLQV EPSSMPSLVP  180
YANGISMQGN KRMKVGTQQK GWFMNMSTMT RGGLGTSTYD SFGTRGDAGV GTSARGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G21760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644077.11e-178PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLJ3KYX01e-176J3KYX0_ORYBR; Uncharacterized protein
STRINGOB01G21760.11e-177(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-18AGAMOUS-like 80