PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G21870.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 540aa    MW: 59912.6 Da    PI: 9.9056
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G21870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.81.4e-20195236242
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa 42 
                   +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v  ++
  OB01G21870.1 195 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAnGCPVRKQVGLAH 236
                   7***************************999*******7666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-20185236IPR003657WRKY domain
PROSITE profilePS5081119.818189232IPR003657WRKY domain
SuperFamilySSF1182906.28E-18191238IPR003657WRKY domain
SMARTSM007745.9E-18194246IPR003657WRKY domain
PfamPF031067.6E-19196238IPR003657WRKY domain
PfamPF133591.8E-22306446IPR027806Harbinger transposase-derived nuclease domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MWCNFCNGAE AAAAEAAPPP PPSRPRRGGG WVVPGARLSL RSGTFWRQAD GEEKGGRRGE  60
IKEVDFFLAS RDAAAARRHD DGFRGTHGGG GGGGGRDDVN IGLDLLTTAT GGAAPAVSGE  120
GDAAENHRKE AATAAVDAEL RRVVEENRRL RGMLDELTRS YSALYHQWLQ ATQQQNHRHP  180
DLIMSNNRSS LSQISDGCQW RKYGQKMAKG NPCPRAYYRC TMANGCPVRK QVGLAHEKGG  240
GLLRPTSRVE CERRSGETVS RYFNKVLHAV RELRDELIKP PSLDTPTKIA GNPRWDPYFK  300
DCIGAIDGTH IRASVRKNME SSFRGRKTHA TQNVMAAVDF DLRFTYILAG WEETAHDAVV  360
LRDALDRENG LVVPQGKFYL VDAGYGAKPG FLPPFRVVRY HLNEWGNNPV QNEKKLFNFR  420
HSSLRVTVER AFGALKRRFK ILDDATPFFP FPTQVDIVEM DSSNGKGGST HASWTSTMSS  480
FMLSHLANLV ASGIRTSSCF KQVHLNACAR ALNEMFCTTL TGDQIKNHLK TWQKKVWQDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G21870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704180.0AK070418.1 Oryza sativa Japonica Group cDNA clone:J023049E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683046.11e-153uncharacterized protein LOC101764104
TrEMBLJ3KYY10.0J3KYY1_ORYBR; Uncharacterized protein
STRINGOB01G21870.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-22WRKY family protein