PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G22010.1

Common Name

LOC102719528

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 862aa MW: 96223.7 Da PI: 7.0152

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G22010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	121.5	3.8e-38	107	184	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC adls+a++yh+rhkvCe h+k+ vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLa+hn+rrrk+q+ OB01G22010.1 107 CCQVDGCLADLSSARDYHKRHKVCELHTKSGVVRIKNIEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRRRKEQT 184 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-29	102	169	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.086	105	182	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-35	106	185	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-28	108	181	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	9.7E-5	598	742	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.15E-5	630	742	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.03E-4	685	741	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence Send to blast
MSSGLKKKSL EWDLNDWRWD SNLFLATPSN ASTSRCRNRE LGRAEGEIDF GVVDKRRRVS 60 PEEEDDGEGC SNAATTNGDD SWIAVQRERS SEDEMPRKGA CSSSTPCCQV DGCLADLSSA 120 RDYHKRHKVC ELHTKSGVVR IKNIEHRFCQ QCSRFHFLQE FDEGKKSCRS RLAQHNRRRR 180 KEQTQAGLDV NSLNGNHSLS NMLLLLLKQL SGLDSGGSSE QTSGPNYLVN LLKNLSTIAG 240 TQTYQDMVKN TNSVAVPSHA GNNVANGNSV HDPRSPIPVG TESSAEEPTQ KRRMQNFDLN 300 DAYVEEDENR TDKIVFKLFG KEPKDFPANL RAQILNWLSN FPSDIESYIR PGCVILTIYL 360 RLPNWMWDKL AANPAHWIQK LISMSTDALW RTGWMYARVR DQLTLSCNGS LMLVSPWQPI 420 IGNKHQILFI SPIAVACSST VNFSVKGFNI AQPTTKLFCI FGGKYLIQES TEMLLDGTTM 480 QQGPQCLTFS CSFPSTSGRG FIEVEDYDQS SLSFPFVVAE EYVCSEIRTL EHVLNLVSFD 540 DTSEERNDVF TYRDQALRFL QEFGWFLQRI HIRATFETPE DCTEGFPAAR FRWLLSFAVN 600 QEWCAVVKKL LDTLFQGSVD LVGASTVEFV LGQDLVFTAV NKRSKSLIDF LLTYTTNSAP 660 MDRTEGAASV QFLFTPDIAG PSDVTPLHIA ASNSNSVGVL DALTDDPQQL GIKAWKNARD 720 ATGLTPEDYA QKRGHNSYIQ MVQNKIDSRL PKAHVSVPMT GSLSTTDIAE KHSNRSKPTD 780 QIAFDVEKGQ QSAKPPPICR QCLPEPAYRH HANRFLSTRP AVLSLVAIAA VCVCVGLIMQ 840 GPPHIGGMRG PFRWNSLLSG PK

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence Send to blast

MSSGLKKKSL EWDLNDWRWD SNLFLATPSN ASTSRCRNRE LGRAEGEIDF GVVDKRRRVS  60
PEEEDDGEGC SNAATTNGDD SWIAVQRERS SEDEMPRKGA CSSSTPCCQV DGCLADLSSA  120
RDYHKRHKVC ELHTKSGVVR IKNIEHRFCQ QCSRFHFLQE FDEGKKSCRS RLAQHNRRRR  180
KEQTQAGLDV NSLNGNHSLS NMLLLLLKQL SGLDSGGSSE QTSGPNYLVN LLKNLSTIAG  240
TQTYQDMVKN TNSVAVPSHA GNNVANGNSV HDPRSPIPVG TESSAEEPTQ KRRMQNFDLN  300
DAYVEEDENR TDKIVFKLFG KEPKDFPANL RAQILNWLSN FPSDIESYIR PGCVILTIYL  360
RLPNWMWDKL AANPAHWIQK LISMSTDALW RTGWMYARVR DQLTLSCNGS LMLVSPWQPI  420
IGNKHQILFI SPIAVACSST VNFSVKGFNI AQPTTKLFCI FGGKYLIQES TEMLLDGTTM  480
QQGPQCLTFS CSFPSTSGRG FIEVEDYDQS SLSFPFVVAE EYVCSEIRTL EHVLNLVSFD  540
DTSEERNDVF TYRDQALRFL QEFGWFLQRI HIRATFETPE DCTEGFPAAR FRWLLSFAVN  600
QEWCAVVKKL LDTLFQGSVD LVGASTVEFV LGQDLVFTAV NKRSKSLIDF LLTYTTNSAP  660
MDRTEGAASV QFLFTPDIAG PSDVTPLHIA ASNSNSVGVL DALTDDPQQL GIKAWKNARD  720
ATGLTPEDYA QKRGHNSYIQ MVQNKIDSRL PKAHVSVPMT GSLSTTDIAE KHSNRSKPTD  780
QIAFDVEKGQ QSAKPPPICR QCLPEPAYRH HANRFLSTRP AVLSLVAIAA VCVCVGLIMQ  840
GPPHIGGMRG PFRWNSLLSG PK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-26	102	181	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	58	KRRRV
2	176	181	RRRRKE

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G22010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644087.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X2
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	J3KYZ5	0.0	J3KYZ5_ORYBR; Uncharacterized protein
STRING	OB01G22010.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-179	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Entrez Gene	102719528

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]