PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G22640.1
Common NameLOC102703345
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 320aa    MW: 33673.1 Da    PI: 6.4097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G22640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l++++ ++G g W++ +r  g+ R++k+c++rw +yl
     OB01G22640.1 14 RGRWTKEEDEKLARYIGEHGEGAWRSLPRNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding52.41.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+  +v++++ lG++ W++Ia +++ gRt++++k++w+++l
     OB01G22640.1  67 RGNISPEEEAMIVKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.382961IPR017930Myb domain
SuperFamilySSF466895.31E-2811108IPR009057Homeodomain-like
SMARTSM007176.0E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
CDDcd001671.09E-101661No hitNo description
PROSITE profilePS5129425.06162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2565115IPR009057Homeodomain-like
SMARTSM007173.8E-1666114IPR001005SANT/Myb domain
PfamPF002499.4E-1567112IPR001005SANT/Myb domain
CDDcd001674.32E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRAPCCEKV GLRRGRWTKE EDEKLARYIG EHGEGAWRSL PRNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SPEEEAMIVK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKAPEFR  120
GGAGAGAVVD VDLSKLPGGG KRRGGRTGRS SGKGNTKVKT NTTTKTKEND NAAAPEAGRN  180
DDDGDGRGIG NVSAASHSEG QAQASGSGLT SDGLEEGPVG LSEEMVSGPP GPASPKPDVG  240
QGRSSAESGS GSSGPSKALG QDAGHRSMDW DLVGLDDGLA DDDMWGPLTW DYGEMVVGPD  300
GGAQHDDGAL SELFFLGNGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G22640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2886991e-158AK288699.1 Oryza sativa Japonica Group cDNA, clone: J090061C22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644114.10.0PREDICTED: myb-related protein P-like
TrEMBLJ3KZ580.0J3KZ58_ORYBR; Uncharacterized protein
STRINGOB01G22640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-69myb domain protein 12