PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G23170.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 142aa    MW: 16565.4 Da    PI: 6.5107
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G23170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like25.52.9e-08861242455
       G2-like  24 sekAtPktilelmkv.......kgLtlehvkSHLQkYRl 55 
                   +++ +P  il++mk+         Lt+e+v SHLQkYR+
  OB01G23170.1  86 HDEPVPTDILKVMKLwmdpssdMELTRENVSSHLQKYRT 124
                   677899999999986443333347**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-787128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MTMKLEEKKC RVTVCPDINA AMKLLLERGK QFDFVVMSVE SICSLSHDEK KFICEGVGLR  60
LVALMAEEDN FYRLTPILNA SMLSRHDEPV PTDILKVMKL WMDPSSDMEL TRENVSSHLQ  120
KYRTKINHIR IYKENQYEEV PI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G23170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696974.13e-84PREDICTED: two-component response regulator ARR10-like
TrEMBLJ3KZB11e-101J3KZB1_ORYBR; Uncharacterized protein
STRINGOB01G23170.11e-102(Oryza brachyantha)