PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G24090.1
Common NameLOC102712858
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 132aa    MW: 14258 Da    PI: 9.0461
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G24090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.5e-202256135
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  OB01G24090.1 22 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 56
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-161675IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.9271652IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-131656No hitNo description
Gene3DG3DSA:3.30.50.103.7E-162057IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.12E-132157No hitNo description
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
PfamPF003201.6E-172256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MGSTDREVVG IDVAEDAARR SCVECRATTT PMWRSGPTGP RSLCNACGIR YRKKRRQDLG  60
LDLNQQPQRQ HGEVVIPEAK DSNSNSNSNS SSGSSSSNLQ AVQKRRLLMG VEEAALLLMT  120
LSSPSSSTLL HG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G24090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1324001e-120BT132400.1 Oryza sativa clone RRlibD00393 mRNA sequence.
GenBankCT8296261e-120CT829626.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA214F08, full insert sequence.
GenBankCT8415701e-120CT841570.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644147.12e-92PREDICTED: GATA transcription factor 23-like
TrEMBLJ3KZK34e-91J3KZK3_ORYBR; Uncharacterized protein
STRINGOB01G24090.17e-92(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-18GATA transcription factor 23