PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G24420.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 523aa    MW: 58181.6 Da    PI: 11.7015
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G24420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-202167349
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  ie++ +rqv+fskRr+g++KKA+EL+ LC+a vav+ fs  g+++ +
  OB01G24420.1 21 IEDSGKRQVSFSKRRAGLFKKASELCLLCGASVAVLAFSGAGNVFAF 67
                  9*****************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.1651171IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-261170IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-231282IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-151333IPR002100Transcription factor, MADS-box
PfamPF003193.3E-212167IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-153348IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-154869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MGRPRARGTS KGKQRIEIRY IEDSGKRQVS FSKRRAGLFK KASELCLLCG ASVAVLAFSG  60
AGNVFAFGGP SADAVVRHYY YYASSLRGVS GGALPSSSAT AAPPRRGCAE XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXPPAVA PPPGRHARPR LRGAGGAMAS GGADQGGGGG  420
GGGTGSRYRG QGHEGRGREA VLVGRRRGGA RRGGAATFRH GARKAQAQRP PLRQQAAALS  480
HAITIDIAAA AAAVFSSVDT MLYYDAPSNA LIMVDGCNLL HFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G24420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-20AGAMOUS-like 62