PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G32460.1

Common Name

LOC102712670

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 78aa MW: 8965.86 Da PI: 5.1342

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G32460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.9	7.1e-11	33	71	4	44
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +T+eE++l + +++ G++ W++Ia +++ gRt +++ +w OB01G32460.1 33 FTEEEEDLVFRMHRLVGNR-WELIAGRIP-GRTTEEIEKFW 71 9****************.*****.*****9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.832	25	78	IPR017930	Myb domain
SMART	SM00717	1.7E-7	29	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.21E-9	32	72	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-13	32	71	IPR009057	Homeodomain-like
CDD	cd00167	1.57E-8	33	71	No hit	No description
Pfam	PF00249	5.6E-10	33	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:1900033	Biological Process	negative regulation of trichome patterning
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MESSSGSQEG KNSKTSDGSI QEVNSTAQNF VHFTEEEEDL VFRMHRLVGN RWELIAGRIP 60 GRTTEEIEKF WAIKHQDK

Functional Description ? help Back to Top
Source	Description
UniProt	MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269\|PubMed:22168948}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G32460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833447	3e-61	CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644376.1	1e-51	PREDICTED: MYB-like transcription factor ETC3 isoform X1
Refseq	XP_006644377.1	1e-51	PREDICTED: MYB-like transcription factor ETC3 isoform X1
Refseq	XP_015697875.1	1e-51	PREDICTED: MYB-like transcription factor ETC3 isoform X1
Swissprot	B3H4X8	1e-21	TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBL	J3L1Z0	3e-50	J3L1Z0_ORYBR; Uncharacterized protein
STRING	OB01G32460.1	5e-51	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5275	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30424.1	6e-24	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	102712670

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang M,Hu Y,Liu X,Li Y,Hou X Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development. Front Plant Sci, 2015. 6: p. 955 [PMID:26579186]