PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G32480.1
Common NameLOC102713132
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 78aa    MW: 8858.82 Da    PI: 7.3664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G32480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-113271344
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     ++T+eE++l  + +++ G++ W++Ia +++ gRt+k++  +w
     OB01G32480.1 32 PFTEEEEDLVFRIHRLVGNR-WELIAGRIP-GRTAKEVEMFW 71
                     79******************.*********.******98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.6962578IPR017930Myb domain
SMARTSM007173.2E-82977IPR001005SANT/Myb domain
SuperFamilySSF466896.55E-103273IPR009057Homeodomain-like
PfamPF002491.5E-103271IPR001005SANT/Myb domain
CDDcd001676.32E-93271No hitNo description
Gene3DG3DSA:1.10.10.605.5E-143272IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MDSNRGSQGK NSKTSDGCET KGVNSTAQNF APFTEEEEDL VFRIHRLVGN RWELIAGRIP  60
GRTAKEVEMF WARKQQDT
Functional Description ? help Back to Top
Source Description
UniProtMYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G32480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8334472e-78CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644378.19e-53PREDICTED: MYB-like transcription factor ETC3
SwissprotB3H4X83e-18TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBLJ3L1Z22e-51J3L1Z2_ORYBR; Uncharacterized protein
STRINGOB01G32480.13e-52(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.11e-20CAPRICE-like MYB3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang M,Hu Y,Liu X,Li Y,Hou X
    Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development.
    Front Plant Sci, 2015. 6: p. 955
    [PMID:26579186]