PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G32710.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 307aa    MW: 32879.4 Da    PI: 10.9887
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G32710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.69e-27181239259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p ++++tY  +H h+
  OB01G32710.1 181 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMADHCHP 239
                   799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.125175241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-27176241IPR003657WRKY domain
SuperFamilySSF1182901.96E-24178241IPR003657WRKY domain
SMARTSM007747.6E-32180240IPR003657WRKY domain
PfamPF031062.1E-22182239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRGPPLRLRV VVVMDQHFND WDLQAVVRSC SFPQPEQPAG GPTRVGGVGS AVPAPPEAAG  60
APAGPGQVTR APEGAAAKAK AAGASALYDL EYLDLDHKPF FLPGSSSSFR AVARTRGEDD  120
SKSHEVMISF PAAAASTSGA QPRSPSGRKP GIRTPRPKRS KKSQLKKVVY EVPVADGGVS  180
SDLWAWRKYG QKPIKGSPYP RGYYKCSSMK GCMARKMVER SPAKPGMLVV TYMADHCHPV  240
PTQLNALAGT TRHKCTPAED DLQPTTESRG APCSRQSGRR RRDGEVRGRR QRAVCGGRGG  300
RRRRGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-21162242280Disease resistance protein RRS1
5w3x_D8e-21162242280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298306GGRRRRGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G32710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114160.0AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706010.0AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644388.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLJ3L2150.0J3L215_ORYBR; Uncharacterized protein
STRINGOB01G32710.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-40WRKY family protein