PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G33620.1
Common NameLOC102703729
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 234aa    MW: 25476.8 Da    PI: 8.8657
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G33620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1885138356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   k+ +++keq + Lee F+ n++++ +++e LA kl+L  rqV vWFqNrRa+ k
  OB01G33620.1  85 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTK 138
                   67789***********************************************98 PP
2HD-ZIP_I/II1201.3e-3885172289
   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                   kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+ee++rL++eveeLr+
  OB01G33620.1  85 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEETRRLQREVEELRA 172
                   9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1755141IPR009057Homeodomain-like
SuperFamilySSF466893.08E-1970141IPR009057Homeodomain-like
PROSITE profilePS5007116.84480140IPR001356Homeobox domain
SMARTSM003891.2E-1582144IPR001356Homeobox domain
CDDcd000863.76E-1583141No hitNo description
PfamPF000469.5E-1685138IPR001356Homeobox domain
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PfamPF021835.3E-9140173IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-21140183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGATSPSGLE LTMAVPGLSS SSGSEGAGCN STSNNNNNGG GGGGCNMRDL DINQPASGGE  60
EEEFPMGSVE EDEEERGVGG PHRPKKLRLS KEQSRLLEES FRLNHTLTPK QKEALAIKLK  120
LRPRQVEVWF QNRRARTKLK QTEMECEYLK RCFGSLTEET RRLQREVEEL RAMRVAPPTV  180
LSPHTRQPLP ASALTMCPRC ERITAATGPP VARPPSSAAA GSSPFHPRRP SAAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G33620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457270.0AF145727.1 Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644426.11e-169PREDICTED: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX11e-132HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-132HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLJ3L2A61e-168J3L2A6_ORYBR; Uncharacterized protein
STRINGOB01G33620.11e-169(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.18e-59homeobox-leucine zipper protein 17