PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G34710.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 130aa    MW: 13645.3 Da    PI: 8.5813
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G34710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.99e-211246135
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  OB01G34710.1 12 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 46
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.1E-21663IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.404642IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-15747No hitNo description
Gene3DG3DSA:3.30.50.106.9E-18746IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.13E-141143No hitNo description
PfamPF003201.9E-181246IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MSGGAASAPR RCANCDTTST PLWRNGPRGP KSLCNACGIR YKKEERRAAA AAVAPTALAS  60
DSGVDYAYGY PRQQQQWGCY GPAVAKAASF GAFGDAVSED GPCLPWGLGV MPSSPAFSAV  120
REVPSLFQYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G34710.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032841e-116AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01.
GenBankAP0149571e-116AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-116CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646176.24e-90PREDICTED: GATA transcription factor 20-like
TrEMBLJ3L2L55e-89J3L2L5_ORYBR; Uncharacterized protein
STRINGOB01G34710.19e-90(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.14e-24GATA transcription factor 20