PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G35220.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 189aa    MW: 21087.5 Da    PI: 6.4091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G35220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.12.8e-09108172158
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekew 58 
                   lp+G++F+Ptd+el+ e+L+ k++ +       +   +    +i+   +i++++P++Lp +++  ++++
  OB01G35220.1 108 LPAGVKFDPTDQELL-EHLEGKARPDArklhplV---DefipTIEGEnGICYTHPERLPGTYTCYDRST 172
                   799************.99****998885665442...133333665557**********5433333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-10100175IPR003441NAC domain
PROSITE profilePS5100510.396108189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLASA AAVAAAKKQQ QQLQASPHVN LIKTCPSCGH RAQYEQFSRT  60
HIYCALDTYI DQRRKHTYID GFASDGIEHG GQSQLQAAAA TIQDLPGLPA GVKFDPTDQE  120
LLEHLEGKAR PDARKLHPLV DEFIPTIEGE NGICYTHPER LPGTYTCYDR STHQYISVWV  180
SSADQKLFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G35220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032232e-98AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBankAP0037062e-98AP003706.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1125_C04.
GenBankAP0149572e-98AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-98CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688316.14e-66PREDICTED: NAC domain-containing protein 73-like
TrEMBLJ3L2R61e-141J3L2R6_ORYBR; Uncharacterized protein
STRINGOB01G35220.11e-142(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3873733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.12e-35NAC domain containing protein 73