PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G36520.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 391aa    MW: 42762.9 Da    PI: 10.5071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G36520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.63.7e-31211304187
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ +
  OB01G36520.1 211 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAT 304
                   89*******************************5556799**************************************************6644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-38206305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-30209305IPR015300DNA-binding pseudobarrel domain
CDDcd100175.41E-29209302No hitNo description
PROSITE profilePS5086313.69211322IPR003340B3 DNA binding domain
PfamPF023625.7E-28211304IPR003340B3 DNA binding domain
SMARTSM010199.8E-22211310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAMCTHGHSR GQPAHITSTA KNKPILLSLS SYTLLMKPWS HHIPWAEPGS RSELTAPTNQ  60
HLTLSLPPWR DVALSKVQHN TMNIFYNDPA TEKRKKKKKP KQNKTKVANH LPPSLHADMR  120
FRGRDAVTNF RPLAEADPDA AAELRFLATR SKAEVVDMLR KHTYFDELAQ SKRALAASTP  180
SAATTTACLA NDNLSSPRSP SAGAAARDHL FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ  240
LPSAGGESKG VLLNFEDAAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG LHAGDVVGFY  300
RSATSTGDEG KLFIECKLVR TTSAALAAPA DQPAASPVKT VRLFGVDLLK TPAPEQQMAG  360
CKRARDLATT TPPQAAAAAA FKKQCIELAL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-482053152109B3 domain-containing transcription factor NGA1
5os9_B2e-482053152109B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199EKRKKKKKP
29298KRKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G36520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419840.0AK241984.1 Oryza sativa Japonica Group cDNA, clone: J075097P17, full insert sequence.
GenBankAP0034500.0AP003450.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0034C09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691223.11e-170PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX91e-160Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLJ3L3460.0J3L346_ORYBR; Uncharacterized protein
STRINGOB01G36520.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.28e-66related to ABI3/VP1 2