PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G37620.1
Common NameLOC102710066
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 286aa    MW: 31602.6 Da    PI: 7.7248
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G37620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-1568165295
                   EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   +k+l  sdv+++gr+vlpkk ae++     +  k ++k l + d ++ + W++k++y  ++ks++yvl+ ++ ++v+ ++L+ gD++v++ d+ ++ 
  OB01G37620.1  68 QKELRYSDVSQLGRIVLPKKEAEAYlpiltS--KDGKKSLCMHDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHDLQLGDSIVIYKDD-ENN 160
                   688899**********************752..446678*****7888*********89999999**99.********************444.555 PP

                   ..EEE CS
            B3  91 elvvk 95 
                   ++v++
  OB01G37620.1 161 RFVIG 165
                   55665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2366174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-1766164IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-2266164No hitNo description
PROSITE profilePS508639.03767170IPR003340B3 DNA binding domain
SMARTSM010194.2E-1267170IPR003340B3 DNA binding domain
PfamPF023623.4E-1268165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAGVTSKRRS SSASAPSSSS GDGAAVSDRP RGVTRKRRSG GRCPRPAAAL IPTAPRPHQA  60
AGLRVILQKE LRYSDVSQLG RIVLPKKEAE AYLPILTSKD GKKSLCMHDL LNAQLWTFKY  120
RYWPNNKSRM YVLENTGDYV RTHDLQLGDS IVIYKDDENN RFVIGAKKAG DQQAATVPQV  180
DEHMSTLFPI FPIAQVDDYL SPMAPQVDIS AFVSHADENH EIFDGILNSL PEIPVANVRY  240
SDFFDPFDDG MDMANTLNTN QSSNLHVTDE KSGHSLFPNP KSGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-39631791116B3 domain-containing transcription factor FUS3
6j9b_D4e-39631791116B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338TRKRRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G37620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099200.0AK109920.1 Oryza sativa Japonica Group cDNA clone:002-150-E10, full insert sequence.
GenBankEF5211820.0EF521182.1 Orayza sativa japonica LFL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644610.10.0PREDICTED: B3 domain-containing protein LFL1 isoform X1
SwissprotA4LBC00.0LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLJ3L3F60.0J3L3F6_ORYBR; Uncharacterized protein
STRINGOB01G37620.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.15e-41B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]