PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G37710.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 122aa MW: 14006.5 Da PI: 9.3677

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G37710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.7e-30	36	94	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg+H h OB01G37710.1 36 LDDGYKWRKYGKKTVKNSPNPRNYYRCSTEGCTVKKRVERDRNDPRYVVTMYEGRHSHV 94 59*******************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-31	22	94	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-27	28	95	IPR003657	WRKY domain
PROSITE profile	PS50811	31.169	31	96	IPR003657	WRKY domain
SMART	SM00774	1.2E-31	36	95	IPR003657	WRKY domain
Pfam	PF03106	4.0E-24	37	93	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
SEGEHFRTAV AALADEGRAR TTDRIAFRTR SDDEVLDDGY KWRKYGKKTV KNSPNPRNYY 60 RCSTEGCTVK KRVERDRNDP RYVVTMYEGR HSHVCPGTVY YAAQDAASGR FFVAGMHHPD 120 LN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-25	26	96	7	77	Probable WRKY transcription factor 4
2lex_A	5e-25	26	96	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G37710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108555	1e-123	AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence.
GenBank	AY870609	1e-123	AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015689727.1	3e-82	PREDICTED: probable WRKY transcription factor 50, partial
Swissprot	Q8VWQ5	1e-35	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	J3L3G5	4e-86	J3L3G5_ORYBR; Uncharacterized protein
STRING	OB01G37710.1	7e-87	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	6e-38	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]