PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G38300.1
Common NameLOC102719906
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 401aa    MW: 45088.5 Da    PI: 10.5779
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G38300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.34e-2021120199
                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                   ffkvl     + ++rl +p +f++++        ++ ke s+  tle +sgr+W v +   ++ +++++t+GW +Fv+++ L++ +fvvF++dg++ 
  OB01G38300.1  21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesskaKSLKEASMAATLEGPSGRTWLVVI--HRTTEGTFFTSGWPKFVQDQALRDLEFVVFRYDGNTH 112
                   56666..3444.457********888***999996666799*****************..9*********************************999 PP

                   E..EEEEE-S CS
            B3  90 felvvkvfrk 99 
                   f  + +vf++
  OB01G38300.1 113 F--TAMVFDR 120
                   9..6666665 PP
2B3512.7e-16292378598
                   -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +++ +v  s ++++p  f ++h   ++e ++++l+d+ g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+   ef  +v++fr
  OB01G38300.1 292 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHIFR 378
                   6788999999*********9995..345679***************4.444455..9**********************9986666..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2114123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2117125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.56218121IPR003340B3 DNA binding domain
CDDcd100179.51E-1819119No hitNo description
PfamPF023628.3E-1821119IPR003340B3 DNA binding domain
SMARTSM010195.0E-1121121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-21280378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-23282378IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-24286378No hitNo description
SMARTSM010191.7E-10288380IPR003340B3 DNA binding domain
PROSITE profilePS5086313.761288380IPR003340B3 DNA binding domain
PfamPF023623.1E-15290378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MPGAGGTTKS LWASAERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESSK AKSLKEASMA  60
ATLEGPSGRT WLVVIHRTTE GTFFTSGWPK FVQDQALRDL EFVVFRYDGN THFTAMVFDR  120
TACEREDLIG GGGDRPRKKR GRRPRDASRD TPRPKKDSVG KELVTYRASP SGQQLQILDS  180
NWTTEPGSAA VKNEEDAEEP PLRALPAAPA QRASPRRVPE GALDVDGAAA RRGSVKTRSL  240
QDDLALASIP PSIQRYKGYV SRRRPVTTAE RQRATEIAHA FRSPLPYCVI RMSTMHVYYS  300
FMMRFPTGFS RQHLPRERTD VVLRDPGGKA WVVLYIPNTR DRLSRGWCAF ARGNCLEEGD  360
YCVFELVAAA EFRVHIFRVV EPAVPAVRLR RVTVTCSRGT T
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G38300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-168CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644645.10.0PREDICTED: B3 domain-containing protein Os01g0723500
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLJ3L3M40.0J3L3M4_ORYBR; Uncharacterized protein
STRINGOB01G38300.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-14related to vernalization1 1