PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G38700.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 310aa    MW: 32173.8 Da    PI: 5.0644
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G38700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-3092150259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp++v++tY+ eHnh+
  OB01G38700.1  92 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRADPETVIVTYSFEHNHS 150
                   69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.186152IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-3088151IPR003657WRKY domain
SuperFamilySSF1182901.83E-2589150IPR003657WRKY domain
SMARTSM007748.1E-3791151IPR003657WRKY domain
PfamPF031063.5E-2693149IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDGEWSDGAV TSSPTMSGGG VQKAGEGVVV AAVDCPGSPV SPSPAAQRSA AGAAASPSGR  60
PRRSAQKRVV TVPLADVSGP RPKGVGEGNT PTDSWAWRKY GQKPIKGSPF PRAYYRCSSS  120
KGCPARKQVE RSRADPETVI VTYSFEHNHS AMAPRAQNRQ AAAPQKPKAP TCRPPEPVLE  180
PEETHHGIPA GPAAGGGAGV RDEFRWLYDV VSVTSSTSPS DIDAADDMQL YDQPMFFGGA  240
VVDTAAVLPD EFGDAVGGLG GEVLGEEEAM FEGLGELPEC AMVFRRHAGD GLAMAGGVKV  300
EQPAESTAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-17931491671WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G38700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097700.0AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
GenBankAY8706030.0AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624912.11e-146probable WRKY transcription factor 65
TrEMBLJ3L3R40.0J3L3R4_ORYBR; Uncharacterized protein
STRINGOB01G38700.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.17e-37WRKY DNA-binding protein 69