PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G38820.1
Common NameLOC102702893
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 234aa    MW: 26208.7 Da    PI: 7.5628
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G38820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.6e-33271192103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k++++++d++++ +++w + gn+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++         weF+h+sF +g+ +ll +i 
  OB01G38820.1  27 FVAKTFHMVSDPSTNAVVRWGDAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDR---------WEFAHESFLRGQAQLLPRIV 114
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rkk++
  OB01G38820.1 115 RKKKK 119
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.9E-3621110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-5123116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-3224116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-172750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-2927116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-177890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGSECKVHQL HAAGDSDGGG PGAVAPFVAK TFHMVSDPST NAVVRWGDAG NTFLVLDPAA  60
FSDFLLPSYF KHRNFASFVR QLNTYGFRKV DPDRWEFAHE SFLRGQAQLL PRIVRKKKKA  120
SGRELCEEGE EVRGTIEAVQ RLRDEQRGME EELQAMDQRL RTAESRPGQM MAFLSKLADD  180
PGVVLRAMLA KKEELSAAGN DGPDPCKRRR IGADGGRDIF TELDLDPWRV FERK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-271912112125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206210KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G38820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663160.0AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence.
GenBankAY3444930.0AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689817.11e-173PREDICTED: heat stress transcription factor C-1b-like
SwissprotQ942D61e-142HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLJ3L3S61e-171J3L3S6_ORYBR; Uncharacterized protein
STRINGOB01G38820.11e-172(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-59heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]