PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G39550.1
Common NameLOC102712308
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 385aa    MW: 40370 Da    PI: 6.4033
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G39550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.7e-19261295135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C++C t kTp+WR gp g+ktLCnaCG++y++ +l
  OB01G39550.1 261 CVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 295
                   *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.3E-7221346IPR016679Transcription factor, GATA, plant
SMARTSM004012.0E-19255305IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.716255291IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-15256292IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-16257319No hitNo description
CDDcd002024.30E-15260307No hitNo description
PROSITE patternPS003440261286IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16261295IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEATAEYGVH GGGGAAYYGG AGREKKAQAQ QGCGDHFAVD DLLVLPYDEE DEREGEDGGG  60
KEEAGLGNAS ADSSTITALD SSSNSFGLAD GDFSGELCEP YDQLAELEWL SNYMVEGEDT  120
FATEDLHKLQ LISGIPSGGF STACALSAQA APAAASAAVQ PGGFLPEAPV PAKARSKRSR  180
AAPGNWSSRL LVLPPPPASP PSPASMAISP AESGVSAHAF PVKKPSKPAK KKDAPPQPQL  240
SSVPVHSGGS APVAAGEGRR CVHCDTDKTP QWRTGPMGPK TLCNACGVRY KSGRLVPEYR  300
PAASPTFVVS KHSNSHRKVM ELRRQKEIHQ QTPHHQPHPH VVAGGGVGSL MHMQSSMLFD  360
GTSPFVSSDD LLINHHLGTD FRQLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G39550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218960.0AK121896.1 Oryza sativa Japonica Group cDNA clone:J033105E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644696.10.0PREDICTED: GATA transcription factor 12
TrEMBLJ3L3Z90.0J3L3Z9_ORYBR; GATA transcription factor
STRINGOB01G39550.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-58GATA transcription factor 12