PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G39870.1
Common NameLOC102716734
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 306aa    MW: 33315.6 Da    PI: 4.48
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G39870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-3097155259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
  OB01G39870.1  97 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 155
                   69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-3194157IPR003657WRKY domain
SuperFamilySSF1182904.58E-2695157IPR003657WRKY domain
SMARTSM007742.9E-3696156IPR003657WRKY domain
PROSITE profilePS5081131.86997157IPR003657WRKY domain
PfamPF031063.1E-2698155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAGEEEEMDR STSAEDGYCS AGTDSPRAES VDEQGGTEES SPPGGQKREL LSPSASPSPP  60
LPPAKRSRRS VEKRVVSVPI AECGDRPKGA GEGPPPSDSW AWRKYGQKPI KGSPYPRGYY  120
RCSSSKGCPA RKQVERSRAD PTVLLVTYSF EHNHPWPQPK TSCHASKSSP RPAAPKPEPA  180
AEGQQPEPAE HESSAELEVA EAEPEQEPEP VVKQEEEQKV VLEPAAATTL APAPVEEEEE  240
NFDFGWIDQY HPTWHRSYAP LMPPEEWERE LQGDDALFAG LGELPECAVV FGRRPELGLA  300
ATAPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-2073157679Disease resistance protein RRS1
5w3x_D7e-2073157679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G39870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8415830.0CT841583.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688107.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 65
TrEMBLJ3L4310.0J3L431_ORYBR; Uncharacterized protein
STRINGOB01G39870.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-38WRKY DNA-binding protein 65