PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G40300.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 157aa    MW: 17613.3 Da    PI: 11.0925
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G40300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.15.9e-113068442
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42
                   kr +r   NR +A+rsR RK+++i eLe+ v +L++e 
  OB01G40300.1 30 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEV 68
                  5999********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-142791IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7952981IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-123185No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-143184No hitNo description
PfamPF001704.3E-103176IPR004827Basic-leucine zipper domain
CDDcd147038.10E-213283No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MAQLPPKIPV AAPPQQEQAA ASPTELIRDP KRVKRILANR QSAQRSRVRK LQYISELERS  60
VTTLQNEVSV LSPRVAFLDQ QRTILTVGNS HLKQRIAALA QDKIFKDAHQ EALRKEIERL  120
RQVYQQQNIK LSGGLAADHA HAHGGPPPVR AEKELMS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G40300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085530.0AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646335.11e-100PREDICTED: basic leucine zipper 6, partial
SwissprotQ5JMK65e-95BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLJ3L4741e-108J3L474_ORYBR; Uncharacterized protein
STRINGOB01G40300.11e-109(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.13e-57bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]