PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G42720.1
Common NameLOC102708940
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 236aa    MW: 24096.3 Da    PI: 10.3141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G42720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-203283156
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  OB01G42720.1 32 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83
                  68********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-143282IPR001471AP2/ERF domain
CDDcd000188.88E-193290No hitNo description
Gene3DG3DSA:3.30.730.102.4E-323390IPR001471AP2/ERF domain
SMARTSM003802.5E-373396IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-223391IPR016177DNA-binding domain
PROSITE profilePS5103224.4083390IPR001471AP2/ERF domain
PRINTSPR003673.8E-113445IPR001471AP2/ERF domain
PRINTSPR003673.8E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAPRVATAEK VAVAPPTGLG LGVGGGVGAG GPHYRGVRKR PWGRFAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQSMVECG GSPSSNSTVD TNGGGAQTPM  120
QAMPLPPTLD LDLFHRAAAV TAVTSAGVRF PFKGCPVARA APLLFFFSKR AAGAAAAAAG  180
YRMVKLASPV TVAAVAQSDS DSSSVVDLAH SPSGVAATKA AAAFDLDLNR PPPVEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-232995168ATERF1
3gcc_A5e-232995168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G42720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644842.11e-168PREDICTED: ethylene-responsive transcription factor 11
TrEMBLJ3L4W61e-166J3L4W6_ORYBR; Uncharacterized protein
STRINGOB01G42720.11e-167(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-21erf domain protein 9