PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G44140.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 271aa    MW: 30200.2 Da    PI: 6.3695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G44140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.51e-2171131359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                   Dg+ WrKYGqK++k+s fpr YYrC+++   +C + k v++++ +dp + ++tY+ eH+++
  OB01G44140.1  71 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedkQCLASKLVQQENdDDPPLYKVTYTYEHTCN 131
                   9**************************99999*******987516899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-2258131IPR003657WRKY domain
SuperFamilySSF1182901.7E-2162132IPR003657WRKY domain
SMARTSM007744.9E-3369132IPR003657WRKY domain
PfamPF031061.0E-2371130IPR003657WRKY domain
PROSITE profilePS5081115.93971133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MASPRLKREQ SFDFEESSSQ EAMGSAASAS YSPPGGVFGI SPTPESSPRD GRKRRKDRPS  60
WVKHTFTPHF DGHLWRKYGQ KNIKDSAFPR LYYRCSYRED KQCLASKLVQ QENDDDPPLY  120
KVTYTYEHTC NTTPVPTPDV VAEQPAPAPG DAYLLRFGSS QVDREQQQQR GAARRPFMML  180
SFDSSSHRLH HEQPPAFPPN HQLPAAASSS PSFTAEALPP PAPPPTAMHD VDGGDLFSTW  240
DSFRYGLDDG HGHLGSHVYL PDDCSGGDDN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-15711301068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156RKRRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G44140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033029e-77AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033489e-77AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149579e-77AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126099e-77CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644112.11e-124probable WRKY transcription factor 2
TrEMBLJ3L5A80.0J3L5A8_ORYBR; Uncharacterized protein
STRINGOB01G44140.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.15e-18WRKY DNA-binding protein 38