PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G44150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 236aa    MW: 25982.4 Da    PI: 10.1046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G44150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.82.1e-23122183259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59 
                   +Dg+ WrKYGqK++++s++ r YY+Ct++   +C +kk+v+++++ +p ++ +tY geH+++
  OB01G44150.1 122 KDGFLWRKYGQKNIQDSNYLRLYYKCTFSrerRCAAKKQVQQKDDgEPPMFLVTYLGEHTCQ 183
                   7**************************998899*******987643789***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-24111184IPR003657WRKY domain
SuperFamilySSF1182902.75E-22116184IPR003657WRKY domain
SMARTSM007741.6E-33121184IPR003657WRKY domain
PfamPF031065.4E-24122183IPR003657WRKY domain
PROSITE profilePS5081116.088123185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAFGQGTIEQ LYRELAGGRQ LSANLQALLE GPLDSRVQKE AVDVSRELGR VFMVSLYMLK  60
PGSSSSIIPE EVARTTTPET RTDDSICLHT ARKLKRTRSE EVPPRNGREE VKRTEVTPSP  120
YKDGFLWRKY GQKNIQDSNY LRLYYKCTFS RERRCAAKKQ VQQKDDGEPP MFLVTYLGEH  180
TCQAQAQAVP GTPTTTAASS PPPTRRRAAG GSPAGRGGPS LFSRLLLPHA VGGGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-151231831069OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G44150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033022e-83AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033482e-83AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149572e-83AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-83CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646438.11e-139PREDICTED: probable WRKY transcription factor 62
TrEMBLJ3L5A91e-173J3L5A9_ORYBR; Uncharacterized protein
STRINGOB01G44150.11e-174(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.14e-23WRKY DNA-binding protein 62