PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G44160.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 269aa    MW: 29576.2 Da    PI: 5.0591
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G44160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.53e-09701151959
                   SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--SS- CS
          WRKY  19 efprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHnhe 59 
                   +  rsYYrC++    +Cp++k+v++ + d  p + +++Y  eH+++
  OB01G44160.1  70 PKVRSYYRCSYYrerRCPAQKHVQQRNGDdvPAMYVVVYIHEHTCQ 115
                   678*******987889*******998877457899*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.5E-762116IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-1068115IPR003657WRKY domain
PROSITE profilePS508119.67270115IPR003657WRKY domain
SuperFamilySSF1182909.55E-970115IPR003657WRKY domain
PfamPF031062.9E-1070115IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAPVGNQMEE LMLKVKKDEL ELVVGCSIEL ALKTIAPEMQ LPENTDTLSS RRRVPVEEVR  60
PEKDQQHQLP KVRSYYRCSY YRERRCPAQK HVQQRNGDDV PAMYVVVYIH EHTCQAALGE  120
LPDAANSSGG GAAAPGYFPA GETSPSSLRR WGAAQVLVGR PPPQLVDERA AMEERERQVL  180
VSSLARVLQG QQCYDDESHG VVVAAVVHAP VAAPVSASSS ELPVRPDHGE ELDVKDYDVT  240
DALLWGPFGG TVDSNSYGQH LTSTRCFEV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G44160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877887.11e-59probable WRKY transcription factor 4
TrEMBLJ3L5B00.0J3L5B0_ORYBR; Uncharacterized protein
STRINGOB01G44160.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837