PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G44170.1
Common NameLOC102707075
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 279aa    MW: 29546.9 Da    PI: 5.1888
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G44170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.41.4e-23112170258
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnh 58 
                    Dg+ WrKYGqKe++g ++pr YYrC+++  gC ++++v++s+e+p +++i Y geH++
  OB01G44170.1 112 ADGFIWRKYGQKEINGCRHPRLYYRCAFRaqGCAATRRVQQSQEEPAAFVIAYYGEHTC 170
                   6**************************9999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-24105170IPR003657WRKY domain
SuperFamilySSF1182901.57E-22107171IPR003657WRKY domain
SMARTSM007741.2E-31111172IPR003657WRKY domain
PfamPF031062.7E-23113170IPR003657WRKY domain
PROSITE profilePS5081120.036113168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MALGSPTAVV LELMTMGYQS AAYLGELLRA ASPTPASEQQ ELAAEILRCC DRVIARLSAG  60
ANGGRSKKRK AVEPAALGVA AGTSSSPDPV TPTKRRARGA EAVREITSGT TADGFIWRKY  120
GQKEINGCRH PRLYYRCAFR AQGCAATRRV QQSQEEPAAF VIAYYGEHTC GGDAAAAAWQ  180
EREMPPAVIN SGASNTSAAA AADRNMGWRT PALLGVEQRS CGGDAPSETS QGWSPSFSSE  240
VELDVAGFDL DVAGAEAYSS PVWEFLNGSF DWESVINSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-161131701068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G44170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644916.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLJ3L5B10.0J3L5B1_ORYBR; Uncharacterized protein
STRINGOB01G44170.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-23WRKY DNA-binding protein 46