PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G44400.1

Common Name

LOC102711753

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 249aa MW: 26183.7 Da PI: 6.7867

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G44400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.8	5.6e-41	61	160	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l +++e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael+++ OB01G44400.1 61 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVSEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAELEAV 157 7**********************************************************************************************99 PP DUF260 98 kee 100 ++e OB01G44400.1 158 RTE 160 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.1080.10	5.8E-4	53	179	No hit	No description
PROSITE profile	PS50891	25.274	60	161	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-41	61	158	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MSTERERLDE VGKKIKREPD TSGVVVAAAA ATGTATATGA PIEHRVPHRL GLGGAVNTVT 60 PCAACKLLRR RCAQECPFAP YFSPHEPHKF AAVHKVFGAS NVSKMLLEVS EAERADAASS 120 LVYEANLRLR DPVYGCMGAI SMLQQQVNAL EAELEAVRTE IFKHRYRQAG AGVPGLMDDV 180 HAAAVFPSPA PPPIHARDVV SVVEAGGQEL TGAPVISAAA SPPVYAAGQP SSTTDYGSLN 240 TSEHAAYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	61	182	11	131	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	61	182	11	131	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G44400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121919	0.0	AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644931.1	0.0	PREDICTED: LOB domain-containing protein 15 isoform X1
Swissprot	Q8L5T5	8e-67	LBD15_ARATH; LOB domain-containing protein 15
Swissprot	Q9AT61	2e-66	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	J3L5D4	0.0	J3L5D4_ORYBR; Uncharacterized protein
STRING	OB01G44400.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	7e-69	LOB domain-containing protein 15

Link Out ? help Back to Top
Entrez Gene	102711753

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]